Index

A

AbstractCatmaidClient (class in catpy.client) abutting (catpy.client.ConnectorRelation attribute) ABUTTING (catpy.client.ConnectorRelationType attribute) add_stack() (catpy.CatmaidUrl method) (catpy.client.CatmaidUrl method)

as_future() (in module catpy.image) as_future_response() (in module catpy.image) attached_to (catpy.client.ConnectorRelation attribute) ATTACHMENT (catpy.client.ConnectorRelationType attribute) auth (catpy.image.ImageFetcher attribute)

B

base_url (catpy.applications.base.CatmaidClientApplication attribute) (catpy.applications.CatmaidClientApplication attribute)

BrokenSliceHandling (class in catpy.image)

C

C (catpy.image.Orientation3D attribute) CatmaidClient (class in catpy) (class in catpy.client) CatmaidClientApplication (class in catpy.applications) (class in catpy.applications.base) CatmaidUrl (class in catpy) (class in catpy.client) catpy (module) catpy.applications (module) catpy.applications.base (module) catpy.applications.export (module) catpy.applications.nameresolver (module) catpy.applications.relation_identifier (module) catpy.client (module)

catpy.exceptions (module) catpy.image (module) catpy.util (module) clear() (catpy.image.TileCache method) clear_cache() (catpy.image.ImageFetcher method) close_to (catpy.client.ConnectorRelation attribute) comparable_keys (catpy.image.TileIndex attribute) ConnectorRelation (class in catpy.client) ConnectorRelationType (class in catpy.client) convert_nodelink_data() (in module catpy.applications.export) CoordinateTransformer (class in catpy) (class in catpy.client) coords (catpy.image.TileIndex attribute) current_bytes (catpy.image.TileCache attribute)

D

DESMOSOME (catpy.client.ConnectorRelationType attribute) desmosome_with (catpy.client.ConnectorRelation attribute) dict_subtract() (in module catpy.image) DIR_BASED (catpy.image.TileSourceType attribute)

DummyResponse (class in catpy.image) DummyTqdm (class in catpy.image) DVID_IMAGEBLK (catpy.image.TileSourceType attribute) DVID_IMAGETILE (catpy.image.TileSourceType attribute)

E

exception_keys (catpy.client.WrappedCatmaidException attribute)

ExportWidget (class in catpy.applications) (class in catpy.applications.export)

F

fetch() (catpy.applications.base.CatmaidClientApplication method) (catpy.CatmaidClient method) (catpy.applications.CatmaidClientApplication method) (catpy.client.AbstractCatmaidClient method) (catpy.client.CatmaidClient method) FILE_BASED (catpy.image.TileSourceType attribute) FILE_BASED_WITH_ZOOM_DIRS (catpy.image.TileSourceType attribute) FILL (catpy.image.BrokenSliceHandling attribute) fill_tiled_cuboid() (in module catpy.image) FLIXSERVER (catpy.image.TileSourceType attribute) format() (catpy.image.TileSourceType method) FORTRAN (catpy.image.Orientation3D attribute) from_catmaid() (catpy.CatmaidUrl class method) (catpy.CoordinateTransformer class method) (catpy.client.CatmaidUrl class method) (catpy.client.CoordinateTransformer class method) (catpy.image.ImageFetcher class method)

from_dict() (catpy.image.StackMirror class method) from_id() (catpy.applications.relation_identifier.RelationIdentifier method) (catpy.applications.RelationIdentifier method) from_json() (catpy.applications.base.CatmaidClientApplication class method) (catpy.CatmaidClient class method) (catpy.applications.CatmaidClientApplication class method) (catpy.client.CatmaidClient class method) from_relation (catpy.client.ConnectorRelationType attribute) from_stack_info() (catpy.image.ImageFetcher class method) (catpy.image.ProjectStack class method) from_str (catpy.client.StackOrientation attribute) from_url() (catpy.CatmaidUrl class method) (catpy.client.CatmaidUrl class method) from_value (catpy.client.StackOrientation attribute)

G

GAP_JUNCTION (catpy.client.ConnectorRelationType attribute) gapjunction_with (catpy.client.ConnectorRelation attribute) generate_url() (catpy.image.StackMirror method) get() (catpy.client.AbstractCatmaidClient method) (catpy.image.ImageFetcher method) get_connector_archive() (catpy.applications.export.ExportWidget method) (catpy.applications.ExportWidget method) get_fastest_mirror() (catpy.image.Stack method) get_networkx() (catpy.applications.export.ExportWidget method) (catpy.applications.ExportWidget method) get_networkx_dict() (catpy.applications.export.ExportWidget method) (catpy.applications.ExportWidget method) get_neuroml() (catpy.applications.export.ExportWidget method) (catpy.applications.ExportWidget method) get_neuron_name() (catpy.applications.NameResolver method) (catpy.applications.nameresolver.NameResolver method) get_neuron_names() (catpy.applications.NameResolver method) (catpy.applications.nameresolver.NameResolver method)

get_project_space() (catpy.image.ImageFetcher method) get_scaled_space() (catpy.image.ImageFetcher method) get_stack_id() (catpy.applications.NameResolver method) (catpy.applications.nameresolver.NameResolver method) get_stack_space() (catpy.image.ImageFetcher method) get_swc() (catpy.applications.export.ExportWidget method) (catpy.applications.ExportWidget method) get_tile_index() (catpy.image.StackMirror method) get_treenode_and_connector_geometry() (catpy.applications.export.ExportWidget method) (catpy.applications.ExportWidget method) get_treenode_archive() (catpy.applications.export.ExportWidget method) (catpy.applications.ExportWidget method) get_typed() (in module catpy.client) get_user_id() (catpy.applications.NameResolver method) (catpy.applications.nameresolver.NameResolver method) get_virtual_treenodes() (in module catpy.util)

H

H2N5_TILES (catpy.image.TileSourceType attribute)

hash_keys (catpy.image.TileIndex attribute) HDF5 (catpy.image.TileSourceType attribute)

I

id_to_name() (in module catpy.applications.nameresolver) id_to_relation (catpy.applications.relation_identifier.RelationIdentifier attribute) (catpy.applications.RelationIdentifier attribute) ImageFetcher (class in catpy.image)

interpolate_treenodes() (in module catpy.util) is_comparable() (catpy.image.TileIndex method) is_synaptic (catpy.client.ConnectorRelation attribute) is_valid_format_url() (in module catpy.image)

M

make_url() (in module catpy.client)

mirror (catpy.image.ImageFetcher attribute) MultipleMatchingNamesException

N

name_to_id() (in module catpy.applications.nameresolver) NameResolver (class in catpy.applications) (class in catpy.applications.nameresolver)

NameResolverException NoMatchingNamesException NUMPY (catpy.image.Orientation3D attribute)

O

open() (catpy.CatmaidUrl method) (catpy.client.CatmaidUrl method) Orientation3D (class in catpy.image)

orientation_choices (catpy.image.ProjectStack attribute) other (catpy.client.ConnectorRelation attribute) OTHER (catpy.client.ConnectorRelationType attribute)

P

populate_mappings() (catpy.applications.relation_identifier.RelationIdentifier method) (catpy.applications.RelationIdentifier method) post() (catpy.client.AbstractCatmaidClient method) postsynaptic_to (catpy.client.ConnectorRelation attribute) presynaptic_to (catpy.client.ConnectorRelation attribute) PROJECT (catpy.image.ROIMode attribute) project_id (catpy.applications.base.CatmaidClientApplication attribute) (catpy.applications.CatmaidClientApplication attribute)

project_to_stack() (catpy.client.CoordinateTransformer method) (catpy.CoordinateTransformer method) project_to_stack_array() (catpy.client.CoordinateTransformer method) (catpy.CoordinateTransformer method) project_to_stack_coord() (catpy.client.CoordinateTransformer method) (catpy.CoordinateTransformer method) ProjectStack (class in catpy.image)

R

raise_on_error() (catpy.client.WrappedCatmaidException class method) relation_to_id (catpy.applications.relation_identifier.RelationIdentifier attribute) (catpy.applications.RelationIdentifier attribute) RelationIdentifier (class in catpy.applications) (class in catpy.applications.relation_identifier)

RENDER_SERVICE (catpy.image.TileSourceType attribute) REQUEST_QUERY (catpy.image.TileSourceType attribute) response_to_array() (in module catpy.image) response_to_array_callback() (in module catpy.image) roi_to_scaled() (catpy.image.ImageFetcher method) ROIMode (class in catpy.image)

S

SCALED (catpy.image.ROIMode attribute) set_api_token() (catpy.CatmaidClient method) (catpy.client.CatmaidClient method) set_fastest_mirror() (catpy.image.ImageFetcher method) set_http_auth() (catpy.CatmaidClient method) (catpy.client.CatmaidClient method) set_stack_group() (catpy.CatmaidUrl method) (catpy.client.CatmaidUrl method) show_progress (catpy.image.ImageFetcher attribute) spacer (catpy.client.WrappedCatmaidException attribute) SPATIAL (catpy.client.ConnectorRelationType attribute) STACK (catpy.image.ROIMode attribute) Stack (class in catpy.image) stack_to_project() (catpy.client.CoordinateTransformer method) (catpy.CoordinateTransformer method)

stack_to_project_array() (catpy.client.CoordinateTransformer method) (catpy.CoordinateTransformer method) stack_to_project_coord() (catpy.client.CoordinateTransformer method) (catpy.CoordinateTransformer method) stack_to_scaled() (catpy.client.CoordinateTransformer method) (catpy.CoordinateTransformer method) stack_to_scaled_array() (catpy.client.CoordinateTransformer method) (catpy.CoordinateTransformer method) stack_to_scaled_coord() (catpy.client.CoordinateTransformer method) (catpy.CoordinateTransformer method) StackMirror (class in catpy.image) StackOrientation (class in catpy.client) StrEnum (class in catpy.image) SYNAPTIC (catpy.client.ConnectorRelationType attribute)

T

ThreadedImageFetcher (class in catpy.image) TIGHT_JUNCTION (catpy.client.ConnectorRelationType attribute) tightjunction_with (catpy.client.ConnectorRelation attribute) TileCache (class in catpy.image) TileIndex (class in catpy.image)

TileSourceType (class in catpy.image) to_id() (catpy.applications.relation_identifier.RelationIdentifier method) (catpy.applications.RelationIdentifier method) tracing_tool_name (catpy.CatmaidUrl attribute) (catpy.client.CatmaidUrl attribute) type (catpy.client.ConnectorRelation attribute)

U

url_keys (catpy.image.TileIndex attribute)

url_kwargs (catpy.image.TileIndex attribute)

V

VIGRA (catpy.image.Orientation3D attribute)

W

WrappedCatmaidException

write() (catpy.image.DummyTqdm method)

X

XY (catpy.client.StackOrientation attribute)

XYZ (catpy.image.Orientation3D attribute) XZ (catpy.client.StackOrientation attribute)

Z

ZY (catpy.client.StackOrientation attribute)

ZYX (catpy.image.Orientation3D attribute)